Pylogeny is a Python library and code framework for phylogenetic tree reconstruction and scoring.
Allows one to perform the following tasks: (1) Generate and manage phylogenetic tree landscapes. (2) Build and rearrange phylogenetic trees using preset operators such as NNI, SPR, and TBR. (3) Score phylogenetic trees by Log-likelihood and Parsimony.
Dependencies: Pandas, P4 Phylogenetic Library. Suggested: FastTree, RAxML, PytBEAGLEhon.